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https://github.com/MillironX/nf-core_modules.git
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41 lines
1.1 KiB
Text
41 lines
1.1 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FASTK_FASTK as FASTK1 } from '../../../../modules/fastk/fastk/main.nf'
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include { FASTK_FASTK as FASTK2 } from '../../../../modules/fastk/fastk/main.nf'
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include { MERQURYFK_KATCOMP } from '../../../../modules/merquryfk/katcomp/main.nf'
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workflow test_merquryfk_katcomp_png {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true)
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]
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FASTK1 ( input )
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FASTK2 ( input )
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MERQURYFK_KATCOMP (
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FASTK1.out.hist
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.join( FASTK1.out.ktab )
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.join( FASTK2.out.hist )
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.join( FASTK2.out.ktab )
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)
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}
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workflow test_merquryfk_katcomp_pdf {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_1_fastq_gz'], checkIfExists: true)
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]
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FASTK1 ( input )
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FASTK2 ( input )
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MERQURYFK_KATCOMP (
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FASTK1.out.hist
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.join( FASTK1.out.ktab )
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.join( FASTK2.out.hist )
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.join( FASTK2.out.ktab )
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)
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}
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