mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-27 15:53:16 -05:00
33 lines
926 B
YAML
33 lines
926 B
YAML
|
name: fasttree
|
||
|
|
description: Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments.
|
||
|
|
keywords:
|
||
|
|
- phylogeny
|
||
|
|
- newick
|
||
|
|
tools:
|
||
|
|
- fasttree:
|
||
|
|
description: FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences
|
||
|
|
homepage: http://www.microbesonline.org/fasttree/
|
||
|
|
documentation: http://www.microbesonline.org/fasttree/#Usage
|
||
|
|
tool_dev_url: None
|
||
|
|
doi: ""
|
||
|
|
licence: ['GPL v2']
|
||
|
|
|
||
|
|
input:
|
||
|
|
- alignment:
|
||
|
|
type: file
|
||
|
|
description: A FASTA format multiple sequence alignment file
|
||
|
|
pattern: "*.{fasta,fas,fa,mfa}"
|
||
|
|
|
||
|
|
output:
|
||
|
|
- version:
|
||
|
|
type: file
|
||
|
|
description: File containing software version
|
||
|
|
pattern: "*.{version.txt}"
|
||
|
|
- phylogeny:
|
||
|
|
type: file
|
||
|
|
description: A phylogeny in Newick format
|
||
|
|
pattern: "*.{tre}"
|
||
|
|
|
||
|
|
authors:
|
||
|
|
- "@aunderwo"
|