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nf-core_modules/tests/modules/plasmidid/test.yml

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Add plasmidid module (#410) * Adding plasmidid module * Adding test for plasmidid module * Update plasmidid version to 1.6.4 * Adding contigs.fasta file * Update tests * Adding output files on test.yml
2021-04-08 21:44:30 +00:00
- name: plasmidid
Rename software/ directory to modules/ to re-organise module structure (#567) * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
2021-07-07 09:10:18 +00:00
command: nextflow run ./tests/modules/plasmidid -entry test_plasmidid -c tests/config/nextflow.config
Add plasmidid module (#410) * Adding plasmidid module * Adding test for plasmidid module * Update plasmidid version to 1.6.4 * Adding contigs.fasta file * Update tests * Adding output files on test.yml
2021-04-08 21:44:30 +00:00
tags:
- plasmidid
files:
- path: output/plasmidid/test/data/database_reconstruct_test.length
md5sum: a57c401f27ae5133823fb09fb21c8a3c
- path: output/plasmidid/test/data/test.coverage_adapted_clustered_ac
md5sum: 3a9ea6d336e113a74d7fdca5e7b623fc
- path: output/plasmidid/test/data/test.err
FIx plasmidid tests for new contigs.fasta file (#438) * FIx plasmidid tests for new contigs.fasta file * Fixing two md5sum hashes
2021-04-13 07:49:44 +00:00
md5sum: 011108fd8b0bb4a4c0b5b2cf46452a90
Add plasmidid module (#410) * Adding plasmidid module * Adding test for plasmidid module * Update plasmidid version to 1.6.4 * Adding contigs.fasta file * Update tests * Adding output files on test.yml
2021-04-08 21:44:30 +00:00
- path: output/plasmidid/test/data/test.fna
FIx plasmidid tests for new contigs.fasta file (#438) * FIx plasmidid tests for new contigs.fasta file * Fixing two md5sum hashes
2021-04-13 07:49:44 +00:00
md5sum: 503a5e1d4654bb2df19420e211070db3
Add plasmidid module (#410) * Adding plasmidid module * Adding test for plasmidid module * Update plasmidid version to 1.6.4 * Adding contigs.fasta file * Update tests * Adding output files on test.yml
2021-04-08 21:44:30 +00:00
- path: output/plasmidid/test/data/test.gbk
- path: output/plasmidid/test/data/test.gff
FIx plasmidid tests for new contigs.fasta file (#438) * FIx plasmidid tests for new contigs.fasta file * Fixing two md5sum hashes
2021-04-13 07:49:44 +00:00
md5sum: 3ed8912ee9b0712ca491fa78ff5f4da1
Add plasmidid module (#410) * Adding plasmidid module * Adding test for plasmidid module * Update plasmidid version to 1.6.4 * Adding contigs.fasta file * Update tests * Adding output files on test.yml
2021-04-08 21:44:30 +00:00
- path: output/plasmidid/test/data/test.karyotype_individual.txt
md5sum: aaf0f5bfe297fb9846ace761ff018d22
- path: output/plasmidid/test/data/test.karyotype_summary.txt
md5sum: aaf0f5bfe297fb9846ace761ff018d22
- path: output/plasmidid/test/data/test.plasmids.blast
FIx plasmidid tests for new contigs.fasta file (#438) * FIx plasmidid tests for new contigs.fasta file * Fixing two md5sum hashes
2021-04-13 07:49:44 +00:00
md5sum: 241045ea62156c1ca9bc1eb734ac9526
Add plasmidid module (#410) * Adding plasmidid module * Adding test for plasmidid module * Update plasmidid version to 1.6.4 * Adding contigs.fasta file * Update tests * Adding output files on test.yml
2021-04-08 21:44:30 +00:00
- path: output/plasmidid/test/data/test.plasmids.blast.links
FIx plasmidid tests for new contigs.fasta file (#438) * FIx plasmidid tests for new contigs.fasta file * Fixing two md5sum hashes
2021-04-13 07:49:44 +00:00
md5sum: a44d6aa388b582da8ad53c5b49467b8f
Add plasmidid module (#410) * Adding plasmidid module * Adding test for plasmidid module * Update plasmidid version to 1.6.4 * Adding contigs.fasta file * Update tests * Adding output files on test.yml
2021-04-08 21:44:30 +00:00
- path: output/plasmidid/test/data/test.plasmids.complete
FIx plasmidid tests for new contigs.fasta file (#438) * FIx plasmidid tests for new contigs.fasta file * Fixing two md5sum hashes
2021-04-13 07:49:44 +00:00
md5sum: fbc7235285dbb963b07561dd6972a883
Add plasmidid module (#410) * Adding plasmidid module * Adding test for plasmidid module * Update plasmidid version to 1.6.4 * Adding contigs.fasta file * Update tests * Adding output files on test.yml
2021-04-08 21:44:30 +00:00
- path: output/plasmidid/test/database/test.fna
md5sum: 6b843fe652b4369addb382f61952c3dd
- path: output/plasmidid/test/database/test.gbk
- path: output/plasmidid/test/database/test.gff
md5sum: 7e65da147d0a413020b0d92b7b03ffcd
- path: output/plasmidid/test/fasta_files/MT192765.1_term.fasta
FIx plasmidid tests for new contigs.fasta file (#438) * FIx plasmidid tests for new contigs.fasta file * Fixing two md5sum hashes
2021-04-13 07:49:44 +00:00
md5sum: 8a8537dd3b21e6905f9367b51c3b3074
Add plasmidid module (#410) * Adding plasmidid module * Adding test for plasmidid module * Update plasmidid version to 1.6.4 * Adding contigs.fasta file * Update tests * Adding output files on test.yml
2021-04-08 21:44:30 +00:00
- path: output/plasmidid/test/images/test_individual.circos.conf
md5sum: f74467ab77232e2b342e2bd408897b12
- path: output/plasmidid/test/images/test_MT192765.1_individual.circos.conf
md5sum: 548443ba0a68065a69383fe32b226780
- path: output/plasmidid/test/images/test_summary.circos.conf
md5sum: e59dc3b77ee610a48b79230da705aba0
- path: output/plasmidid/test/images/test_MT192765.1.png
- path: output/plasmidid/test/images/test_summary.png
- path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.clusters.tab
md5sum: cf75e4418631796bb4675129b575915d
- path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.representative.fasta
md5sum: 483f4a5dfe60171c86ee9b7e6dff908b
- path: output/plasmidid/test/kmer/database.filtered_0.8_term.0.5.representative.fasta.blast.tmp.ndb
md5sum: f67f8be1e00eb7d3512869071fb4c2c2
- path: output/plasmidid/test/kmer/database.filtered_0.8_term.fasta
md5sum: c7fe0e9e9a94d98d7f85a7be99c032fd
- path: output/plasmidid/test/kmer/database.filtered_0.8_term.mash.distances.tab
md5sum: fd5408c3c2f8f68dc01e0123bb6a9079
- path: output/plasmidid/test/logs/draw_circos_images.log
- path: output/plasmidid/test/logs/plasmidID.log
- path: output/plasmidid/test/test_final_results.html
- path: output/plasmidid/test/test_final_results.tab
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