nf-core_modules/modules/cutadapt/meta.yml

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name: cutadapt
description: Perform adapter/quality trimming on sequencing reads
keywords:
- trimming
- adapter trimming
- adapters
- quality trimming
tools:
- cuatadapt:
description: |
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
documentation: https://cutadapt.readthedocs.io/en/stable/index.html
doi: DOI:10.14806/ej.17.1.200
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: The trimmed/modified fastq reads
pattern: "*fastq.gz"
- log:
type: file
description: cuatadapt log file
pattern: "*cutadapt.log"
- version:
type: file
description: File containing software version
pattern: "versions.yml"
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authors:
- "@drpatelh"
- "@kevinmenden"