2021-02-17 16:09:24 +00:00
|
|
|
name: seqkit_split2
|
|
|
|
description: Split single or paired-end fastq.gz files
|
|
|
|
keywords:
|
|
|
|
- split
|
|
|
|
- fastq
|
|
|
|
tools:
|
|
|
|
- seqkit:
|
|
|
|
description: |
|
|
|
|
Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.
|
|
|
|
homepage: https://github.com/shenwei356/seqkit
|
|
|
|
documentation: https://bioinf.shenwei.me/seqkit/
|
|
|
|
doi: 10.1371/journal.pone.0163962
|
|
|
|
input:
|
|
|
|
- meta:
|
|
|
|
type: map
|
|
|
|
description: |
|
|
|
|
Groovy Map containing sample information
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
2021-02-17 16:15:02 +00:00
|
|
|
- reads:
|
2021-02-17 16:09:24 +00:00
|
|
|
type: file
|
2021-02-17 16:15:02 +00:00
|
|
|
description: FastQ files
|
2021-02-23 14:40:22 +00:00
|
|
|
pattern: "*.{fq.gz/fastq.gz}"
|
2021-02-17 16:09:24 +00:00
|
|
|
output:
|
|
|
|
- meta:
|
|
|
|
type: map
|
|
|
|
description: |
|
|
|
|
Groovy Map containing sample information
|
|
|
|
e.g. [ id:'test', single_end:false ]
|
|
|
|
- reads:
|
|
|
|
type: file
|
|
|
|
description: Split fastq files
|
2021-02-23 14:40:22 +00:00
|
|
|
pattern: "*.{fq.gz/fastq.gz}"
|
2021-02-17 16:09:24 +00:00
|
|
|
- version:
|
|
|
|
type: file
|
|
|
|
description: File containing software version
|
2021-09-27 08:41:24 +00:00
|
|
|
pattern: "versions.yml"
|
2021-02-17 16:09:24 +00:00
|
|
|
authors:
|
|
|
|
- "@FriederikeHanssen"
|