nf-core_modules/tests/modules/seqkit/split2/test.yml

- name: seqkit split2 test_seqkit_split2_single_end_length
  command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_single_end_length -c tests/config/nextflow.config
  tags:
    - seqkit
    - seqkit/split2
  files:
    - path: output/seqkit/test/test_1.part_001.fastq.gz
      md5sum: 7f489b2374c5fcc155a60ce2365a7bb7
    - path: output/seqkit/test/test_1.part_002.fastq.gz
      md5sum: 45cccacb4676bca33beb17064322a781
    - path: output/seqkit/versions.yml
      md5sum: 2d5a709d129be364687cc0b561efa532

- name: seqkit split2 test_seqkit_split2_single_end_size
  command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_single_end_size -c tests/config/nextflow.config
  tags:
    - seqkit
    - seqkit/split2
  files:
    - path: output/seqkit/test/test_1.part_001.fastq.gz
      md5sum: b09324606fb3636b51448d6a007d2c71
    - path: output/seqkit/test/test_1.part_002.fastq.gz
      md5sum: f7873475d463e3b4d21dccbf8e859270
    - path: output/seqkit/versions.yml
      md5sum: 490d00accd1092a8eca4e83ed809bad3

- name: seqkit split2 test_seqkit_split2_single_end_part
  command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_single_end_part -c tests/config/nextflow.config
  tags:
    - seqkit
    - seqkit/split2
  files:
    - path: output/seqkit/test/test_1.part_001.fastq.gz
      md5sum: a9d29d08e27246b6d36e21e5def405e3
    - path: output/seqkit/test/test_1.part_002.fastq.gz
      md5sum: 6d547a959adcd027dd1a8734e195dd7d
    - path: output/seqkit/test/test_1.part_003.fastq.gz
      md5sum: 6d63cc8400dd2a96d808514fb18278ee
    - path: output/seqkit/versions.yml
      md5sum: 90431cd3d28954f656988230d4481115

- name: seqkit split2 test_seqkit_split2_paired_end_length
  command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config
  tags:
    - seqkit
    - seqkit/split2
  files:
    - path: output/seqkit/test/test_1.part_001.fastq.gz
      md5sum: 7f489b2374c5fcc155a60ce2365a7bb7
    - path: output/seqkit/test/test_1.part_002.fastq.gz
      md5sum: 45cccacb4676bca33beb17064322a781
    - path: output/seqkit/test/test_2.part_001.fastq.gz
      md5sum: 160b5fd363ff7cad8af9d914269d6426
    - path: output/seqkit/test/test_2.part_002.fastq.gz
      md5sum: 18bc5434cf55706394cccb44e6108561
    - path: output/seqkit/versions.yml
      md5sum: 9272afc1a126ae997a712edeef317f22

- name: seqkit split2 test_seqkit_split2_paired_end_size
  command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_paired_end_size -c tests/config/nextflow.config
  tags:
    - seqkit
    - seqkit/split2
  files:
    - path: output/seqkit/test/test_1.part_001.fastq.gz
      md5sum: b09324606fb3636b51448d6a007d2c71
    - path: output/seqkit/test/test_1.part_002.fastq.gz
      md5sum: f7873475d463e3b4d21dccbf8e859270
    - path: output/seqkit/test/test_2.part_001.fastq.gz
      md5sum: c0602b62aae860dd284c0eb0062c24dd
    - path: output/seqkit/test/test_2.part_002.fastq.gz
      md5sum: 5bc7a98b618100b29910eb41c4c9ac0d
    - path: output/seqkit/versions.yml
      md5sum: af66912ae8abc493f77f70e3bf473144

- name: seqkit split2 test_seqkit_split2_paired_end_part
  command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_paired_end_part -c tests/config/nextflow.config
  tags:
    - seqkit
    - seqkit/split2
  files:
    - path: output/seqkit/test/test_1.part_001.fastq.gz
      md5sum: a9d29d08e27246b6d36e21e5def405e3
    - path: output/seqkit/test/test_1.part_002.fastq.gz
      md5sum: 6d547a959adcd027dd1a8734e195dd7d
    - path: output/seqkit/test/test_1.part_003.fastq.gz
      md5sum: 6d63cc8400dd2a96d808514fb18278ee
    - path: output/seqkit/test/test_2.part_001.fastq.gz
      md5sum: b51a1bed106e4ec0c9be7d9e224d0616
    - path: output/seqkit/test/test_2.part_002.fastq.gz
      md5sum: 079078a7f86114ae29cda8c00d5a7fc9
    - path: output/seqkit/test/test_2.part_003.fastq.gz
      md5sum: 6987941bf8c4a37565e333029ba41ca0
    - path: output/seqkit/versions.yml
      md5sum: 193bc5f0c429076f816ab0a529c4c1fc
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`- name: seqkit split2 test_seqkit_split2_single_end_length`
			`command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_single_end_length -c tests/config/nextflow.config`
try to make a single test pass on GHA, passes locally 2021-02-24 08:48:55 +00:00			`tags:`
			`- seqkit`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- seqkit/split2`
try to make a single test pass on GHA, passes locally 2021-02-24 08:48:55 +00:00			`files:`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_001.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 7f489b2374c5fcc155a60ce2365a7bb7`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_002.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 45cccacb4676bca33beb17064322a781`
			`- path: output/seqkit/versions.yml`
			`md5sum: 2d5a709d129be364687cc0b561efa532`
Add beautiful md5sums 2021-02-23 13:57:07 +00:00
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`- name: seqkit split2 test_seqkit_split2_single_end_size`
			`command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_single_end_size -c tests/config/nextflow.config`
Add all tests back in 2021-02-24 08:57:23 +00:00			`tags:`
			`- seqkit`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- seqkit/split2`
Add all tests back in 2021-02-24 08:57:23 +00:00			`files:`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_001.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: b09324606fb3636b51448d6a007d2c71`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_002.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: f7873475d463e3b4d21dccbf8e859270`
			`- path: output/seqkit/versions.yml`
			`md5sum: 490d00accd1092a8eca4e83ed809bad3`
Add tests for different options 2021-02-23 10:14:51 +00:00
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`- name: seqkit split2 test_seqkit_split2_single_end_part`
			`command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_single_end_part -c tests/config/nextflow.config`
Add all tests back in 2021-02-24 08:57:23 +00:00			`tags:`
			`- seqkit`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- seqkit/split2`
Add all tests back in 2021-02-24 08:57:23 +00:00			`files:`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_001.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: a9d29d08e27246b6d36e21e5def405e3`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_002.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 6d547a959adcd027dd1a8734e195dd7d`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_003.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 6d63cc8400dd2a96d808514fb18278ee`
			`- path: output/seqkit/versions.yml`
			`md5sum: 90431cd3d28954f656988230d4481115`
Add tests for different options 2021-02-23 10:14:51 +00:00
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`- name: seqkit split2 test_seqkit_split2_paired_end_length`
			`command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_paired_end_length -c tests/config/nextflow.config`
Add all tests back in 2021-02-24 08:57:23 +00:00			`tags:`
			`- seqkit`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- seqkit/split2`
Add all tests back in 2021-02-24 08:57:23 +00:00			`files:`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_001.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 7f489b2374c5fcc155a60ce2365a7bb7`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_002.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 45cccacb4676bca33beb17064322a781`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_2.part_001.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 160b5fd363ff7cad8af9d914269d6426`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_2.part_002.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 18bc5434cf55706394cccb44e6108561`
			`- path: output/seqkit/versions.yml`
			`md5sum: 9272afc1a126ae997a712edeef317f22`
Add tests for different options 2021-02-23 10:14:51 +00:00
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`- name: seqkit split2 test_seqkit_split2_paired_end_size`
			`command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_paired_end_size -c tests/config/nextflow.config`
Add all tests back in 2021-02-24 08:57:23 +00:00			`tags:`
			`- seqkit`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- seqkit/split2`
Add all tests back in 2021-02-24 08:57:23 +00:00			`files:`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_001.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: b09324606fb3636b51448d6a007d2c71`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_002.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: f7873475d463e3b4d21dccbf8e859270`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_2.part_001.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: c0602b62aae860dd284c0eb0062c24dd`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_2.part_002.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 5bc7a98b618100b29910eb41c4c9ac0d`
			`- path: output/seqkit/versions.yml`
			`md5sum: af66912ae8abc493f77f70e3bf473144`
Add tests for different options 2021-02-23 10:14:51 +00:00
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`- name: seqkit split2 test_seqkit_split2_paired_end_part`
			`command: nextflow run tests/modules/seqkit/split2 -entry test_seqkit_split2_paired_end_part -c tests/config/nextflow.config`
Add all tests back in 2021-02-24 08:57:23 +00:00			`tags:`
			`- seqkit`
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> 2021-04-08 08:10:52 +00:00			`- seqkit/split2`
Add all tests back in 2021-02-24 08:57:23 +00:00			`files:`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_001.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: a9d29d08e27246b6d36e21e5def405e3`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_002.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 6d547a959adcd027dd1a8734e195dd7d`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_1.part_003.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 6d63cc8400dd2a96d808514fb18278ee`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_2.part_001.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: b51a1bed106e4ec0c9be7d9e224d0616`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_2.part_002.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 079078a7f86114ae29cda8c00d5a7fc9`
Fix version commands: round 3 (#754) * Fix version commands: round 3 * Fix seqkit/split2 modules 2021-09-28 13:37:47 +00:00			`- path: output/seqkit/test/test_2.part_003.fastq.gz`
Update version & prefix (#1120) * Update version & prefix * Fix indentation 2021-12-07 09:22:32 +00:00			`md5sum: 6987941bf8c4a37565e333029ba41ca0`
			`- path: output/seqkit/versions.yml`
			`md5sum: 193bc5f0c429076f816ab0a529c4c1fc`