nf-core_modules/modules/bcftools/norm/meta.yml

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name: bcftools_norm
description: Normalize VCF file
keywords:
- normalize
- norm
- variant calling
- VCF
tools:
- norm:
description: |
Normalize VCF files.
homepage: http://samtools.github.io/bcftools/bcftools.html
documentation: http://www.htslib.org/doc/bcftools.html
doi: 10.1093/bioinformatics/btp352
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcf:
type: file
description: |
The vcf file to be normalized
e.g. 'file1.vcf'
pattern: "*.{vcf,vcf.gz}"
- tbi:
type: file
description: |
An optional index of the VCF file (for when the VCF is compressed)
pattern: "*.vcf.gz.tbi"
- fasta:
type: file
description: FASTA reference file
pattern: "*.{fasta,fa}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- vcf:
type: file
description: VCF normalized output file
pattern: "*.vcf.gz"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@abhi18av"