nf-core_modules/modules/lofreq/indelqual/meta.yml

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name: lofreq_indelqual
description: Inserts indel qualities in a BAM file
keywords:
- bam
- indel
- qualities
tools:
- lofreq:
description: Lofreq is a fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data. It's indelqual programme inserts indel qualities in a BAM file
homepage: https://csb5.github.io/lofreq/
doi: "10.1093/nar/gks918"
licence: ['MIT']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM file
pattern: "*.{bam}"
- fasta:
type: file
description: Reference genome FASTA file
pattern: "*.{fasta}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- bam:
type: file
description: BAM file with indel qualities inserted into it
pattern: "*.{bam}"
authors:
- "@kaurravneet4123"