nf-core_modules/modules/staphopiasccmec/meta.yml

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name: staphopiasccmec
description: Predicts Staphylococcus aureus SCCmec type based on primers.
keywords:
- amr
- fasta
- sccmec
tools:
- staphopiasccmec:
description: Predicts Staphylococcus aureus SCCmec type based on primers.
homepage: https://staphopia.emory.edu
documentation: https://github.com/staphopia/staphopia-sccmec
tool_dev_url: https://github.com/staphopia/staphopia-sccmec
doi: https://doi.org/10.7717/peerj.5261
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: FASTA assembly file
pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- tsv:
type: file
description: Tab-delimited results
pattern: "*.{tsv}"
authors:
- "@rpetit3"