2021-02-03 16:02:58 +00:00
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- name: picard markduplicates on sorted bam
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2021-02-03 16:44:56 +00:00
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command: nextflow run ./tests/software/picard/markduplicates -entry test_picard_markduplicates_sorted_bam -c tests/config/nextflow.config
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2021-02-03 16:02:58 +00:00
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tags:
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- picard
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- picard_markduplicates
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files:
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- path: output/picard/test.MarkDuplicates.metrics.txt
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- path: output/picard/test.bam
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md5sum: 0ed0bfc94069380334ccd595f6d8207c
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- name: picard markduplicates on unsorted bam
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2021-02-03 16:44:56 +00:00
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command: nextflow run ./tests/software/picard/markduplicates -entry test_picard_markduplicates_unsorted_bam -c tests/config/nextflow.config
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2021-02-03 16:02:58 +00:00
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tags:
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- picard
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- picard_markduplicates
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- should fail
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exit_code: 1
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