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nf-core_modules/tests/modules/bcftools/merge/test.yml

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update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-24 18:14:11 +00:00
- name: bcftools merge test_bcftools_merge
update for bcftools merge (#1908) * update for bcftools merge * Update modules/bcftools/merge/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * Update modules/bcftools/merge/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * updated test.yml * added the bed file to the main input tuple * merged all output into one output channel * added a test for bcf.gz output * Update modules/bcftools/merge/main.nf Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * updated the tests Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-07-20 09:22:51 +00:00
command: nextflow run ./tests/modules/bcftools/merge -entry test_bcftools_merge -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/merge/nextflow.config
Add bcftools merge module
2021-02-12 23:08:57 +00:00
tags:
Lint modules ci (#389) * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-08 08:10:52 +00:00
- bcftools/merge
update test data paths (#373) * update test data paths * Update test md5sums * gatk test fixes & update variantfiltration main * few extra fixes after review * fix suspected format error * Update software/gatk4/variantfiltration/main.nf * Update software/gatk4/variantfiltration/main.nf * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-24 18:14:11 +00:00
- bcftools
Add bcftools merge module
2021-02-12 23:08:57 +00:00
files:
- path: output/bcftools/test.vcf.gz
Bump tool versions for modules required in viralrecon (#1859) * Bump tool versions for modules required in viralrecon * Fix all the tests * Fix Prettier lint * Remove empty md5sums
2022-07-07 13:48:04 +00:00
md5sum: 744b28bef1469aabdcfd354293ef725d
update for bcftools merge (#1908) * update for bcftools merge * Update modules/bcftools/merge/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * Update modules/bcftools/merge/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * updated test.yml * added the bed file to the main input tuple * merged all output into one output channel * added a test for bcf.gz output * Update modules/bcftools/merge/main.nf Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * updated the tests Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-07-20 09:22:51 +00:00
- name: bcftools merge test_bcftools_merge_bed
command: nextflow run ./tests/modules/bcftools/merge -entry test_bcftools_merge_bed -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/merge/nextflow.config
tags:
- bcftools/merge
- bcftools
files:
- path: output/bcftools/test.vcf.gz
md5sum: 9597e71ae1706f76f00707687be43240
- name: bcftools merge test_bcftools_merge_gvcf
command: nextflow run ./tests/modules/bcftools/merge -entry test_bcftools_merge_gvcf -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/merge/nextflow.config
tags:
- bcftools/merge
- bcftools
files:
- path: output/bcftools/test.vcf.gz
md5sum: 8aef4d860228cb651e0cb920376f5118
- name: bcftools merge test_bcftools_merge_bcf
command: nextflow run ./tests/modules/bcftools/merge -entry test_bcftools_merge_bcf -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/merge/nextflow.config
tags:
- bcftools/merge
- bcftools
files:
- path: output/bcftools/test.bcf.gz
md5sum: 3ca1ab0d9a6ede049c6eeadf88177eb9
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