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8656636f0d
* update for bcftools merge * Update modules/bcftools/merge/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * Update modules/bcftools/merge/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> * updated test.yml * added the bed file to the main input tuple * merged all output into one output channel * added a test for bcf.gz output * Update modules/bcftools/merge/main.nf Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com> * updated the tests Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se> Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
35 lines
1.4 KiB
YAML
35 lines
1.4 KiB
YAML
- name: bcftools merge test_bcftools_merge
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command: nextflow run ./tests/modules/bcftools/merge -entry test_bcftools_merge -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/merge/nextflow.config
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tags:
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- bcftools/merge
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- bcftools
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files:
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- path: output/bcftools/test.vcf.gz
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md5sum: 744b28bef1469aabdcfd354293ef725d
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- name: bcftools merge test_bcftools_merge_bed
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command: nextflow run ./tests/modules/bcftools/merge -entry test_bcftools_merge_bed -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/merge/nextflow.config
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tags:
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- bcftools/merge
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- bcftools
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files:
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- path: output/bcftools/test.vcf.gz
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md5sum: 9597e71ae1706f76f00707687be43240
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- name: bcftools merge test_bcftools_merge_gvcf
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command: nextflow run ./tests/modules/bcftools/merge -entry test_bcftools_merge_gvcf -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/merge/nextflow.config
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tags:
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- bcftools/merge
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- bcftools
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files:
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- path: output/bcftools/test.vcf.gz
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md5sum: 8aef4d860228cb651e0cb920376f5118
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- name: bcftools merge test_bcftools_merge_bcf
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command: nextflow run ./tests/modules/bcftools/merge -entry test_bcftools_merge_bcf -c ./tests/config/nextflow.config -c ./tests/modules/bcftools/merge/nextflow.config
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tags:
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- bcftools/merge
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- bcftools
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files:
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- path: output/bcftools/test.bcf.gz
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md5sum: 3ca1ab0d9a6ede049c6eeadf88177eb9
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