mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-15 06:03:10 +00:00
17 lines
550 B
Text
17 lines
550 B
Text
|
#!/usr/bin/env nextflow
|
||
|
|
|
||
|
|
nextflow.enable.dsl = 2
|
||
|
|
|
||
|
|
include { GAPPA_EXAMINEASSIGN } from '../../../../modules/gappa/examineassign/main.nf'
|
||
|
|
|
||
|
|
workflow test_gappa_examineassign {
|
||
|
|
|
||
|
|
input = [
|
||
|
|
[ id:'test' ], // meta map
|
||
|
|
file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/gappa/epa_result.jplace.gz', checkIfExists: true)
|
||
|
|
]
|
||
|
|
taxonomy = file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/gappa/gappa_taxonomy.tsv', checkIfExists: true)
|
||
|
|
|
||
|
|
GAPPA_EXAMINEASSIGN ( input, taxonomy )
|
||
|
|
}
|