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https://github.com/MillironX/nf-core_modules.git
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46ad627a73
* Created gappa/examineassign from template * Test passing * Run only when taxonomy is set * Revert adding taxonomy to when * Add period after prefix * Fix test * Add some keywords * Add one more keyword
16 lines
550 B
Text
16 lines
550 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { GAPPA_EXAMINEASSIGN } from '../../../../modules/gappa/examineassign/main.nf'
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workflow test_gappa_examineassign {
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input = [
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[ id:'test' ], // meta map
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file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/gappa/epa_result.jplace.gz', checkIfExists: true)
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]
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taxonomy = file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/gappa/gappa_taxonomy.tsv', checkIfExists: true)
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GAPPA_EXAMINEASSIGN ( input, taxonomy )
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}
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