nf-core_modules/tests/software/ivar/variants/test.yml

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2021-02-16 04:49:27 +00:00
- name: ivar variants no gff no mpileup
command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_no_gff_no_mpileup -c tests/config/nextflow.config
tags:
- ivar
- ivar_variants
files:
- path: output/ivar/test.tsv
md5sum: 3fd376b8ad80f27a999edf3345d2014a
- name: ivar variants no gff with mpileup
2021-02-16 04:59:45 +00:00
command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_no_gff_with_mpileup -c tests/config/nextflow.config --save_mpileup
2021-02-15 17:29:40 +00:00
tags:
- ivar
- ivar_variants
files:
- path: output/ivar/test.tsv
md5sum: 3fd376b8ad80f27a999edf3345d2014a
- path: output/ivar/test.mpileup
md5sum: b3dfd337dfcd313d6cc9680d7e796fe6
2021-02-16 04:49:27 +00:00
- name: ivar variants with gff with mpileup
2021-02-16 04:59:45 +00:00
command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_with_gff_with_mpileup -c tests/config/nextflow.config --gff tests/data/gff/sarscov2/MN908947.3.gff3 --save_mpileup
2021-02-15 17:29:40 +00:00
tags:
- ivar
- ivar_variants
files:
- path: output/ivar/test.tsv
md5sum: 3fd376b8ad80f27a999edf3345d2014a
- path: output/ivar/test.mpileup
md5sum: b3dfd337dfcd313d6cc9680d7e796fe6