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30 lines
No EOL
1.1 KiB
YAML
30 lines
No EOL
1.1 KiB
YAML
- name: ivar variants no gff no mpileup
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command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_no_gff_no_mpileup -c tests/config/nextflow.config
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tags:
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- ivar
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- ivar_variants
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files:
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- path: output/ivar/test.tsv
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md5sum: 3fd376b8ad80f27a999edf3345d2014a
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- name: ivar variants no gff with mpileup
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command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_no_gff_with_mpileup -c tests/config/nextflow.config --save_mpileup
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tags:
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- ivar
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- ivar_variants
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files:
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- path: output/ivar/test.tsv
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md5sum: 3fd376b8ad80f27a999edf3345d2014a
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- path: output/ivar/test.mpileup
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md5sum: b3dfd337dfcd313d6cc9680d7e796fe6
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- name: ivar variants with gff with mpileup
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command: nextflow run ./tests/software/ivar/variants -entry test_ivar_variants_with_gff_with_mpileup -c tests/config/nextflow.config --gff tests/data/gff/sarscov2/MN908947.3.gff3 --save_mpileup
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tags:
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- ivar
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- ivar_variants
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files:
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- path: output/ivar/test.tsv
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md5sum: 3fd376b8ad80f27a999edf3345d2014a
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- path: output/ivar/test.mpileup
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md5sum: b3dfd337dfcd313d6cc9680d7e796fe6 |