nf-core_modules/modules/rseqc/bamstat/meta.yml

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name: rseqc_bamstat
description: Generate statistics from a bam file
keywords:
- bam
- qc
- bamstat
tools:
- rseqc:
description: |
RSeQC package provides a number of useful modules that can comprehensively evaluate
high throughput sequence data especially RNA-seq data.
homepage: http://rseqc.sourceforge.net/
documentation: http://rseqc.sourceforge.net/
doi: 10.1093/bioinformatics/bts356
licence: ['GPL-3.0-or-later']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: the bam file to calculate statistics of
pattern: "*.{bam}"
output:
- txt:
type: file
description: bam statistics report
pattern: "*.bam_stat.txt"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@drpatelh"
- "@kevinmenden"