mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 07:42:05 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
37 lines
997 B
YAML
37 lines
997 B
YAML
name: rseqc_bamstat
|
|
description: Generate statistics from a bam file
|
|
keywords:
|
|
- bam
|
|
- qc
|
|
- bamstat
|
|
tools:
|
|
- rseqc:
|
|
description: |
|
|
RSeQC package provides a number of useful modules that can comprehensively evaluate
|
|
high throughput sequence data especially RNA-seq data.
|
|
homepage: http://rseqc.sourceforge.net/
|
|
documentation: http://rseqc.sourceforge.net/
|
|
doi: 10.1093/bioinformatics/bts356
|
|
licence: ['GPL-3.0-or-later']
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- bam:
|
|
type: file
|
|
description: the bam file to calculate statistics of
|
|
pattern: "*.{bam}"
|
|
output:
|
|
- txt:
|
|
type: file
|
|
description: bam statistics report
|
|
pattern: "*.bam_stat.txt"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|