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nf-core_modules/modules/fasttree/meta.yml

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adding fasttree module (#412) * adding fasttree module * correct trailing whitespace * using sarscov2 as a test dir * remove TODO * update test data naming * further test data naming updates * remove options in favour of $options.args * ensure non standard exit codes don't cause an issue * update md5sum
2021-04-08 17:15:23 +00:00
name: fasttree
description: Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments.
keywords:
- phylogeny
- newick
tools:
- fasttree:
description: FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences
homepage: http://www.microbesonline.org/fasttree/
documentation: http://www.microbesonline.org/fasttree/#Usage
tool_dev_url: None
doi: ""
Fix formatting in yaml files, add yamllint config (#1279) * fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2022-02-15 11:15:27 +00:00
licence: ["GPL v2"]
adding fasttree module (#412) * adding fasttree module * correct trailing whitespace * using sarscov2 as a test dir * remove TODO * update test data naming * further test data naming updates * remove options in favour of $options.args * ensure non standard exit codes don't cause an issue * update md5sum
2021-04-08 17:15:23 +00:00
input:
- alignment:
type: file
description: A FASTA format multiple sequence alignment file
pattern: "*.{fasta,fas,fa,mfa}"
output:
Update versions key in meta.yml for all modules (#787)
2021-10-03 07:20:26 +00:00
- versions:
adding fasttree module (#412) * adding fasttree module * correct trailing whitespace * using sarscov2 as a test dir * remove TODO * update test data naming * further test data naming updates * remove options in favour of $options.args * ensure non standard exit codes don't cause an issue * update md5sum
2021-04-08 17:15:23 +00:00
type: file
Update versions key in meta.yml for all modules (#787)
2021-10-03 07:20:26 +00:00
description: File containing software versions
Bulk update modules to use versions.yml (#739) * New functions.nf * Convert code to create versions.yml * Update meta.yml * update output channel * Fix more meta.yml * Manually update remaining modules * remove superflous echo * Fix misformatted meta.yml files * Fix yaml, was list instead of dict * fix version for bcftools Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-09-27 08:41:24 +00:00
pattern: "versions.yml"
adding fasttree module (#412) * adding fasttree module * correct trailing whitespace * using sarscov2 as a test dir * remove TODO * update test data naming * further test data naming updates * remove options in favour of $options.args * ensure non standard exit codes don't cause an issue * update md5sum
2021-04-08 17:15:23 +00:00
- phylogeny:
type: file
description: A phylogeny in Newick format
pattern: "*.{tre}"
authors:
- "@aunderwo"
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