2019-12-05 14:18:09 +00:00
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name: FastQC
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description: Run FastQC on sequenced reads
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keywords:
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- Quality Control
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- QC
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- Adapters
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tools:
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- fastqc:
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description: |
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FastQC gives general quality metrics about your reads.
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It provides information about the quality score distribution
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across your reads, the per base sequence content (%A/C/G/T).
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You get information about adapter contamination and other
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overrepresented sequences.
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2019-12-05 14:35:51 +00:00
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homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
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2019-12-05 14:18:09 +00:00
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documentation: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/
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input:
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-
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2020-03-16 14:17:38 +00:00
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- name:
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2019-12-05 14:18:09 +00:00
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type: string
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description: Sample identifier
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- reads:
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type: file
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description: Input FastQ file, or pair of files
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output:
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-
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- report:
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type: file
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description: FastQC report
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2020-07-11 11:54:12 +00:00
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pattern: "*_fastqc.{zip,html}"
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2019-12-05 14:18:09 +00:00
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authors:
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2020-07-11 11:54:12 +00:00
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- "@ewels"
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- "@FelixKrueger"
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