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14 lines
437 B
Text
14 lines
437 B
Text
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#!/usr/bin/env nextflow
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nextflow.preview.dsl = 2
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include '../../../../tests/functions/check_process_outputs.nf' params(params)
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include '../main.nf' params(params)
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reads = '../../../../test-datasets/tools/bwa/mem/reads/*_R{1,2}_001.fastq.gz'
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index = '../../../../test-datasets/tools/bwa/mem/index/H3N2.{amb,ann,bwt,pac,sa}'
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prefix = 'H3N2'
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workflow {
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read_input=Channel.fromFilePairs(reads)
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bwa_mem(read_input,file(index),prefix)
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}
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