nf-core_modules/software/bwa/mem/test/main.nf
2020-08-05 17:27:42 +01:00

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Text

#!/usr/bin/env nextflow
nextflow.preview.dsl = 2
include '../../../../tests/functions/check_process_outputs.nf' params(params)
include '../main.nf' params(params)
reads = '../../../../test-datasets/tools/bwa/mem/reads/*_R{1,2}_001.fastq.gz'
index = '../../../../test-datasets/tools/bwa/mem/index/H3N2.{amb,ann,bwt,pac,sa}'
prefix = 'H3N2'
workflow {
read_input=Channel.fromFilePairs(reads)
bwa_mem(read_input,file(index),prefix)
}