2019-12-05 14:53:38 +00:00
|
|
|
name: FastQC
|
2019-12-05 14:44:10 +00:00
|
|
|
on:
|
2019-12-05 15:09:28 +00:00
|
|
|
push: {}
|
2019-12-05 14:44:10 +00:00
|
|
|
pull_request:
|
2020-07-11 12:36:12 +00:00
|
|
|
paths: software/fastqc/*
|
2019-12-05 14:44:10 +00:00
|
|
|
|
|
|
|
|
jobs:
|
2019-12-05 15:03:00 +00:00
|
|
|
run_ci_test:
|
2019-12-05 14:44:10 +00:00
|
|
|
runs-on: ubuntu-latest
|
|
|
|
|
|
|
|
|
|
steps:
|
|
|
|
|
|
|
|
|
|
# Check out the repository
|
|
|
|
|
- uses: actions/checkout@v1
|
2019-12-06 08:24:33 +00:00
|
|
|
submodules: true
|
2019-12-05 14:44:10 +00:00
|
|
|
|
2019-12-05 15:03:00 +00:00
|
|
|
- name: Install Nextflow
|
|
|
|
|
run: |
|
|
|
|
|
wget -qO- get.nextflow.io | bash
|
|
|
|
|
sudo mv nextflow /usr/local/bin/
|
|
|
|
|
|
2019-12-05 14:44:10 +00:00
|
|
|
# Test the module
|
2020-07-11 12:36:12 +00:00
|
|
|
- run: nextflow run ./software/fastqc/test/ -ansi-log false
|
