millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-09-22 08:12:03 +00:00
Code Issues Releases Packages Activity
nf-core_modules/tests/software/spades/test.yml

55 lines
2 KiB
YAML
Raw Normal View History

Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- name: spades single end
command: nextflow run ./tests/software/spades -entry test_spades_single_end -c tests/config/nextflow.config
tags:
- spades
- spades_single_end
files:
- path: output/spades/test.assembly.gfa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: b2616d2beba83ab7d361b54778d1e759
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.contigs.fa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: 2690fefde046bc904e90df09a065257a
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.scaffolds.fa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: 2690fefde046bc904e90df09a065257a
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.spades.log
- name: spades paired end
command: nextflow run ./tests/software/spades -entry test_spades_paired_end -c tests/config/nextflow.config
tags:
- spades
- spades_paired_end
files:
- path: output/spades/test.assembly.gfa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: d546f9042f5ff911757e895e7b21f620
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.contigs.fa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: f3e87d68521aa485d70aecd82de519b4
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.spades.log
- name: coronaspades single end
command: nextflow run ./tests/software/spades -entry test_coronospades_single_end -c tests/config/nextflow.config
tags:
- spades
- coronaspades_single_end
files:
- path: output/spades/test.assembly.gfa
md5sum: 46531ec9b845c1a1cb469627688fecb7
- path: output/spades/test.contigs.fa
md5sum: f2c4a48ebba560aa5c8fde04dbe905fc
- path: output/spades/test.scaffolds.fa
md5sum: f2c4a48ebba560aa5c8fde04dbe905fc
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
- path: output/spades/test.gene_clusters.fa
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.spades.log
- name: coronaspades paired end
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
command: nextflow run ./tests/software/spades -entry test_coronospades_paired_end -c tests/config/nextflow.config
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
tags:
- spades
- coronaspades_paired_end
files:
- path: output/spades/test.assembly.gfa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: d546f9042f5ff911757e895e7b21f620
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.contigs.fa
Restructuring spades tests whith new test data sets + fixing spades tests (#396) * Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-04-01 19:31:23 +00:00
md5sum: f3e87d68521aa485d70aecd82de519b4
- path: output/spades/test.gene_clusters.fa
Add spades module (#277) * Add spades module * Reorder gatk4 modules alphabetically * Update software/spades/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-03-18 13:48:38 +00:00
- path: output/spades/test.spades.log
Reference in a new issue Copy permalink