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https://github.com/MillironX/nf-core_modules.git
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f8e428d690
* Restructuring with new test data sets + fixing tests * Remove checkings for warning files * Remove md5 check for test.gene_clusters.fa Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
54 lines
2 KiB
YAML
54 lines
2 KiB
YAML
- name: spades single end
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command: nextflow run ./tests/software/spades -entry test_spades_single_end -c tests/config/nextflow.config
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tags:
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- spades
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- spades_single_end
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: b2616d2beba83ab7d361b54778d1e759
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- path: output/spades/test.contigs.fa
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md5sum: 2690fefde046bc904e90df09a065257a
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- path: output/spades/test.scaffolds.fa
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md5sum: 2690fefde046bc904e90df09a065257a
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- path: output/spades/test.spades.log
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- name: spades paired end
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command: nextflow run ./tests/software/spades -entry test_spades_paired_end -c tests/config/nextflow.config
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tags:
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- spades
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- spades_paired_end
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: d546f9042f5ff911757e895e7b21f620
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- path: output/spades/test.contigs.fa
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md5sum: f3e87d68521aa485d70aecd82de519b4
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- path: output/spades/test.spades.log
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- name: coronaspades single end
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command: nextflow run ./tests/software/spades -entry test_coronospades_single_end -c tests/config/nextflow.config
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tags:
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- spades
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- coronaspades_single_end
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: 46531ec9b845c1a1cb469627688fecb7
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- path: output/spades/test.contigs.fa
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md5sum: f2c4a48ebba560aa5c8fde04dbe905fc
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- path: output/spades/test.scaffolds.fa
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md5sum: f2c4a48ebba560aa5c8fde04dbe905fc
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- path: output/spades/test.gene_clusters.fa
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- path: output/spades/test.spades.log
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- name: coronaspades paired end
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command: nextflow run ./tests/software/spades -entry test_coronospades_paired_end -c tests/config/nextflow.config
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tags:
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- spades
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- coronaspades_paired_end
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files:
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- path: output/spades/test.assembly.gfa
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md5sum: d546f9042f5ff911757e895e7b21f620
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- path: output/spades/test.contigs.fa
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md5sum: f3e87d68521aa485d70aecd82de519b4
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- path: output/spades/test.gene_clusters.fa
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- path: output/spades/test.spades.log
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