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Changed input to bed files

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sruthipsuresh 2021-01-15 16:52:17 -06:00 committed by GitHub
parent 4181a7356c
commit 00ef1d3863
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1 changed files with 2 additions and 3 deletions
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tests/software/preseq/main.nf
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@ -13,8 +13,7 @@ workflow test_preseq_single_end {
def input = []
input = [ [ id:'test', single_end:true ], // meta map
[ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1106616_5M_subset.bam', checkIfExists: true), ] ]
[ file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true) ]]
PRESEQ_LCEXTRAP_SE ( input )
}
@ -26,7 +25,7 @@ workflow test_preseq_paired_end {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
[ file('https://github.com/smithlabcode/preseq/raw/master/data/SRR1106616_5M_subset.bam', checkIfExists: true), ] ]
[ file("${launchDir}/tests/data/bed/A.bed", checkIfExists: true) ]]
PRESEQ_LCEXTRAP_PE ( input )
}