Rename tools to software

Browse source

...

This commit is contained in:

Phil Ewels 2020-07-11 14:27:21 +02:00

parent edd508487b

commit 014fef2e92

93 changed files with 0 additions and 0 deletions

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

Show stats Download patch file Download diff file Expand all files Collapse all files

0

tools/bowtie2/main.nf → software/bowtie2/main.nf

Unescape Escape View file

0

tools/bowtie2/meta.yml → software/bowtie2/meta.yml

Unescape Escape View file

0

tools/bowtie2/test/main.nf → software/bowtie2/test/main.nf

Unescape Escape View file

0

tools/bowtie2/test/nextflow.config → software/bowtie2/test/nextflow.config

Unescape Escape View file

0

tools/bwa/index/main.nf → software/bwa/index/main.nf

Unescape Escape View file

0

tools/bwa/index/meta.yml → software/bwa/index/meta.yml

Unescape Escape View file

0

tools/bwa/index/test/main.nf → software/bwa/index/test/main.nf

Unescape Escape View file

0

tools/bwa/index/test/nextflow.config → software/bwa/index/test/nextflow.config

Unescape Escape View file

0

tools/bwa/mem/Dockerfile → software/bwa/mem/Dockerfile

Unescape Escape View file

0

tools/bwa/mem/environment.yml → software/bwa/mem/environment.yml

Unescape Escape View file

0

tools/bwa/mem/main.nf → software/bwa/mem/main.nf

Unescape Escape View file

0

tools/bwa/mem/meta.yml → software/bwa/mem/meta.yml

Unescape Escape View file

0

tools/bwa/mem/test/main.nf → software/bwa/mem/test/main.nf

Unescape Escape View file

0

tools/bwa/mem/test/nextflow.config → software/bwa/mem/test/nextflow.config

Unescape Escape View file

0

tools/cutadapt/main.nf → software/cutadapt/main.nf

Unescape Escape View file

0

tools/cutadapt/meta.yml → software/cutadapt/meta.yml

Unescape Escape View file

0

tools/cutadapt/test_paired/main.nf → software/cutadapt/test_paired/main.nf

Unescape Escape View file

0

tools/cutadapt/test_paired/nextflow.config → software/cutadapt/test_paired/nextflow.config

Unescape Escape View file

0

tools/cutadapt/test_single/main.nf → software/cutadapt/test_single/main.nf

Unescape Escape View file

0

tools/cutadapt/test_single/nextflow.config → software/cutadapt/test_single/nextflow.config

Unescape Escape View file

0

tools/fastq_screen/main.nf → software/fastq_screen/main.nf

Unescape Escape View file

0

tools/fastq_screen/meta.yml → software/fastq_screen/meta.yml

Unescape Escape View file

0

tools/fastq_screen/test/main.nf → software/fastq_screen/test/main.nf

Unescape Escape View file

0

tools/fastq_screen/test/nextflow.config → software/fastq_screen/test/nextflow.config

Unescape Escape View file

0

tools/fastqc/Dockerfile → software/fastqc/Dockerfile

Unescape Escape View file

0

tools/fastqc/environment.yml → software/fastqc/environment.yml

Unescape Escape View file

0

tools/fastqc/main.nf → software/fastqc/main.nf

Unescape Escape View file

0

tools/fastqc/meta.yml → software/fastqc/meta.yml

Unescape Escape View file

0

tools/fastqc/test/main.nf → software/fastqc/test/main.nf

Unescape Escape View file

0

tools/fastqc/test/nextflow.config → software/fastqc/test/nextflow.config

Unescape Escape View file

0

tools/gatk/dict/main.nf → software/gatk/dict/main.nf

Unescape Escape View file

0

tools/gatk/dict/meta.yml → software/gatk/dict/meta.yml

Unescape Escape View file

0

tools/gatk/dict/test/main.nf → software/gatk/dict/test/main.nf

Unescape Escape View file

0

tools/gatk/dict/test/nextflow.config → software/gatk/dict/test/nextflow.config

Unescape Escape View file

0

tools/hisat2/main.nf → software/hisat2/main.nf

Unescape Escape View file

0

tools/hisat2/meta.yml → software/hisat2/meta.yml

Unescape Escape View file

0

tools/hisat2/test/main.nf → software/hisat2/test/main.nf

Unescape Escape View file

0

tools/hisat2/test/nextflow.config → software/hisat2/test/nextflow.config

Unescape Escape View file

0

tools/htslib/tabix/main.nf → software/htslib/tabix/main.nf

Unescape Escape View file

0

tools/htslib/tabix/meta.yml → software/htslib/tabix/meta.yml

Unescape Escape View file

0

tools/htslib/tabix/test/main.nf → software/htslib/tabix/test/main.nf

Unescape Escape View file

0

tools/htslib/tabix/test/nextflow.config → software/htslib/tabix/test/nextflow.config

Unescape Escape View file

0

tools/multiqc/main.nf → software/multiqc/main.nf

Unescape Escape View file

0

tools/multiqc/meta.yml → software/multiqc/meta.yml

Unescape Escape View file

0

tools/multiqc/test/main.nf → software/multiqc/test/main.nf

Unescape Escape View file

0

tools/multiqc/test/nextflow.config → software/multiqc/test/nextflow.config

Unescape Escape View file

0

tools/samtools/Dockerfile → software/samtools/Dockerfile

Unescape Escape View file

0

tools/samtools/environment.yml → software/samtools/environment.yml

Unescape Escape View file

0

tools/samtools/faidx/main.nf → software/samtools/faidx/main.nf

Unescape Escape View file

0

tools/samtools/faidx/meta.yml → software/samtools/faidx/meta.yml

Unescape Escape View file

0

tools/samtools/faidx/test/main.nf → software/samtools/faidx/test/main.nf

Unescape Escape View file

0

tools/samtools/faidx/test/nextflow.config → software/samtools/faidx/test/nextflow.config

Unescape Escape View file

0

tools/samtools/index/main.nf → software/samtools/index/main.nf

Unescape Escape View file

0

tools/samtools/index/meta.yml → software/samtools/index/meta.yml

Unescape Escape View file

0

tools/samtools/index/test/main.nf → software/samtools/index/test/main.nf

Unescape Escape View file

0

tools/samtools/index/test/nextflow.config → software/samtools/index/test/nextflow.config

Unescape Escape View file

0

tools/samtools/sort/main.nf → software/samtools/sort/main.nf

Unescape Escape View file

0

tools/samtools/sort/meta.yml → software/samtools/sort/meta.yml

Unescape Escape View file

0

tools/samtools/sort/test/main.nf → software/samtools/sort/test/main.nf

Unescape Escape View file

0

tools/samtools/sort/test/nextflow.config → software/samtools/sort/test/nextflow.config

Unescape Escape View file

0

tools/shovill/main.nf → software/shovill/main.nf

Unescape Escape View file

0

tools/shovill/meta.yml → software/shovill/meta.yml

Unescape Escape View file

0

tools/shovill/test/main.nf → software/shovill/test/main.nf

Unescape Escape View file

0

tools/shovill/test/nextflow.config → software/shovill/test/nextflow.config

Unescape Escape View file

0

tools/tcoffee/main.nf → software/tcoffee/main.nf

Unescape Escape View file

0

tools/tcoffee/meta.yml → software/tcoffee/meta.yml

Unescape Escape View file

0

tools/tcoffee/test/main.nf → software/tcoffee/test/main.nf

Unescape Escape View file

0

tools/tcoffee/test/nextflow.config → software/tcoffee/test/nextflow.config

Unescape Escape View file

0

tools/trim_galore/Dockerfile → software/trim_galore/Dockerfile

Unescape Escape View file

0

tools/trim_galore/environment.yml → software/trim_galore/environment.yml

Unescape Escape View file

0

tools/trim_galore/main.nf → software/trim_galore/main.nf

Unescape Escape View file

0

tools/trim_galore/meta.yml → software/trim_galore/meta.yml

Unescape Escape View file

0

tools/trim_galore/test/main.nf → software/trim_galore/test/main.nf

Unescape Escape View file

0

tools/trim_galore/test/nextflow.config → software/trim_galore/test/nextflow.config

Unescape Escape View file

0

tools/umi_tools/Dockerfile → software/umi_tools/Dockerfile

Unescape Escape View file

0

tools/umi_tools/environment.yml → software/umi_tools/environment.yml

Unescape Escape View file

0

tools/umi_tools/main.nf → software/umi_tools/main.nf

Unescape Escape View file

0

tools/umi_tools/test/input/sample1.bai → software/umi_tools/test/input/sample1.bai

Unescape Escape View file

0

tools/umi_tools/test/input/sample1.bam → software/umi_tools/test/input/sample1.bam

Unescape Escape View file

0

tools/umi_tools/test/input/sample2.bai → software/umi_tools/test/input/sample2.bai

Unescape Escape View file

0

tools/umi_tools/test/input/sample2.bam → software/umi_tools/test/input/sample2.bam

Unescape Escape View file

0

tools/umi_tools/test/input/sample3.bai → software/umi_tools/test/input/sample3.bai

Unescape Escape View file

0

tools/umi_tools/test/input/sample3.bam → software/umi_tools/test/input/sample3.bam

Unescape Escape View file

0

tools/umi_tools/test/input/sample4.bai → software/umi_tools/test/input/sample4.bai

Unescape Escape View file

0

tools/umi_tools/test/input/sample4.bam → software/umi_tools/test/input/sample4.bam

Unescape Escape View file

0

tools/umi_tools/test/input/sample5.bai → software/umi_tools/test/input/sample5.bai

Unescape Escape View file

0

tools/umi_tools/test/input/sample5.bam → software/umi_tools/test/input/sample5.bam

Unescape Escape View file

0

tools/umi_tools/test/input/sample6.bai → software/umi_tools/test/input/sample6.bai

Unescape Escape View file

0

tools/umi_tools/test/input/sample6.bam → software/umi_tools/test/input/sample6.bam

Unescape Escape View file

0

tools/umi_tools/test/main.nf → software/umi_tools/test/main.nf

Unescape Escape View file

0

tools/umi_tools/test/nextflow.config → software/umi_tools/test/nextflow.config

Unescape Escape View file

0

tools/umi_tools/test/verify-checksum.sh → software/umi_tools/test/verify-checksum.sh

Unescape Escape View file

0

tools/umi_tools/umi_tools.yml → software/umi_tools/umi_tools.yml

Unescape Escape View file