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Code Issues Releases Packages Activity

Rename tools to software

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This commit is contained in:
Phil Ewels 2020-07-11 14:27:21 +02:00
parent edd508487b
commit 014fef2e92
93 changed files with 0 additions and 0 deletions
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tools/bowtie2/main.nf → software/bowtie2/main.nf
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tools/bowtie2/meta.yml → software/bowtie2/meta.yml
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tools/bowtie2/test/main.nf → software/bowtie2/test/main.nf
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tools/bowtie2/test/nextflow.config → software/bowtie2/test/nextflow.config
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tools/bwa/index/main.nf → software/bwa/index/main.nf
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tools/bwa/index/meta.yml → software/bwa/index/meta.yml
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tools/bwa/index/test/main.nf → software/bwa/index/test/main.nf
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tools/bwa/index/test/nextflow.config → software/bwa/index/test/nextflow.config
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tools/bwa/mem/Dockerfile → software/bwa/mem/Dockerfile
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tools/bwa/mem/environment.yml → software/bwa/mem/environment.yml
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tools/bwa/mem/main.nf → software/bwa/mem/main.nf
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tools/bwa/mem/meta.yml → software/bwa/mem/meta.yml
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tools/bwa/mem/test/main.nf → software/bwa/mem/test/main.nf
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tools/bwa/mem/test/nextflow.config → software/bwa/mem/test/nextflow.config
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tools/cutadapt/main.nf → software/cutadapt/main.nf
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tools/cutadapt/meta.yml → software/cutadapt/meta.yml
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tools/cutadapt/test_paired/main.nf → software/cutadapt/test_paired/main.nf
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tools/cutadapt/test_paired/nextflow.config → software/cutadapt/test_paired/nextflow.config
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tools/cutadapt/test_single/main.nf → software/cutadapt/test_single/main.nf
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tools/cutadapt/test_single/nextflow.config → software/cutadapt/test_single/nextflow.config
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tools/fastq_screen/main.nf → software/fastq_screen/main.nf
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tools/fastq_screen/meta.yml → software/fastq_screen/meta.yml
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tools/fastq_screen/test/main.nf → software/fastq_screen/test/main.nf
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tools/fastq_screen/test/nextflow.config → software/fastq_screen/test/nextflow.config
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tools/fastqc/Dockerfile → software/fastqc/Dockerfile
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tools/fastqc/environment.yml → software/fastqc/environment.yml
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tools/fastqc/main.nf → software/fastqc/main.nf
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tools/fastqc/meta.yml → software/fastqc/meta.yml
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tools/fastqc/test/main.nf → software/fastqc/test/main.nf
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tools/fastqc/test/nextflow.config → software/fastqc/test/nextflow.config
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tools/gatk/dict/main.nf → software/gatk/dict/main.nf
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tools/gatk/dict/meta.yml → software/gatk/dict/meta.yml
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tools/gatk/dict/test/main.nf → software/gatk/dict/test/main.nf
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tools/gatk/dict/test/nextflow.config → software/gatk/dict/test/nextflow.config
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tools/hisat2/main.nf → software/hisat2/main.nf
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tools/hisat2/meta.yml → software/hisat2/meta.yml
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tools/hisat2/test/main.nf → software/hisat2/test/main.nf
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tools/hisat2/test/nextflow.config → software/hisat2/test/nextflow.config
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tools/htslib/tabix/main.nf → software/htslib/tabix/main.nf
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tools/htslib/tabix/meta.yml → software/htslib/tabix/meta.yml
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tools/htslib/tabix/test/main.nf → software/htslib/tabix/test/main.nf
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tools/htslib/tabix/test/nextflow.config → software/htslib/tabix/test/nextflow.config
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tools/multiqc/main.nf → software/multiqc/main.nf
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tools/multiqc/meta.yml → software/multiqc/meta.yml
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tools/multiqc/test/main.nf → software/multiqc/test/main.nf
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tools/multiqc/test/nextflow.config → software/multiqc/test/nextflow.config
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tools/samtools/Dockerfile → software/samtools/Dockerfile
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tools/samtools/environment.yml → software/samtools/environment.yml
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tools/samtools/faidx/main.nf → software/samtools/faidx/main.nf
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tools/samtools/faidx/meta.yml → software/samtools/faidx/meta.yml
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tools/samtools/faidx/test/main.nf → software/samtools/faidx/test/main.nf
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tools/samtools/faidx/test/nextflow.config → software/samtools/faidx/test/nextflow.config
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tools/samtools/index/main.nf → software/samtools/index/main.nf
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tools/samtools/index/meta.yml → software/samtools/index/meta.yml
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tools/samtools/index/test/main.nf → software/samtools/index/test/main.nf
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tools/samtools/index/test/nextflow.config → software/samtools/index/test/nextflow.config
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tools/samtools/sort/main.nf → software/samtools/sort/main.nf
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tools/samtools/sort/meta.yml → software/samtools/sort/meta.yml
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tools/samtools/sort/test/main.nf → software/samtools/sort/test/main.nf
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tools/samtools/sort/test/nextflow.config → software/samtools/sort/test/nextflow.config
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tools/shovill/main.nf → software/shovill/main.nf
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tools/shovill/meta.yml → software/shovill/meta.yml
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tools/shovill/test/main.nf → software/shovill/test/main.nf
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tools/shovill/test/nextflow.config → software/shovill/test/nextflow.config
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tools/tcoffee/main.nf → software/tcoffee/main.nf
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tools/tcoffee/meta.yml → software/tcoffee/meta.yml
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tools/tcoffee/test/main.nf → software/tcoffee/test/main.nf
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tools/tcoffee/test/nextflow.config → software/tcoffee/test/nextflow.config
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tools/trim_galore/Dockerfile → software/trim_galore/Dockerfile
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tools/trim_galore/environment.yml → software/trim_galore/environment.yml
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tools/trim_galore/main.nf → software/trim_galore/main.nf
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tools/trim_galore/meta.yml → software/trim_galore/meta.yml
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tools/trim_galore/test/main.nf → software/trim_galore/test/main.nf
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tools/trim_galore/test/nextflow.config → software/trim_galore/test/nextflow.config
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tools/umi_tools/Dockerfile → software/umi_tools/Dockerfile
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tools/umi_tools/environment.yml → software/umi_tools/environment.yml
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tools/umi_tools/main.nf → software/umi_tools/main.nf
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tools/umi_tools/test/input/sample1.bai → software/umi_tools/test/input/sample1.bai
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tools/umi_tools/test/input/sample1.bam → software/umi_tools/test/input/sample1.bam
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tools/umi_tools/test/input/sample2.bai → software/umi_tools/test/input/sample2.bai
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tools/umi_tools/test/input/sample2.bam → software/umi_tools/test/input/sample2.bam
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tools/umi_tools/test/input/sample3.bai → software/umi_tools/test/input/sample3.bai
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tools/umi_tools/test/input/sample3.bam → software/umi_tools/test/input/sample3.bam
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tools/umi_tools/test/input/sample4.bai → software/umi_tools/test/input/sample4.bai
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tools/umi_tools/test/input/sample4.bam → software/umi_tools/test/input/sample4.bam
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tools/umi_tools/test/input/sample5.bai → software/umi_tools/test/input/sample5.bai
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tools/umi_tools/test/input/sample5.bam → software/umi_tools/test/input/sample5.bam
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tools/umi_tools/test/input/sample6.bai → software/umi_tools/test/input/sample6.bai
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tools/umi_tools/test/input/sample6.bam → software/umi_tools/test/input/sample6.bam
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tools/umi_tools/test/main.nf → software/umi_tools/test/main.nf
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tools/umi_tools/test/nextflow.config → software/umi_tools/test/nextflow.config
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tools/umi_tools/test/verify-checksum.sh → software/umi_tools/test/verify-checksum.sh
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tools/umi_tools/umi_tools.yml → software/umi_tools/umi_tools.yml
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