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Use newly added test bam

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Thiseas Christos Lamnidis 2022-05-23 15:22:22 +02:00
parent 4317ad85ae
commit 070dee0f5b
1 changed files with 1 additions and 1 deletions
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tests/modules/sexdeterrmine/main.nf
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@ -9,7 +9,7 @@ workflow test_sexdeterrmine {
input = [ input = [
[ id:'test', single_end:false ], // meta map [ id:'test', single_end:false ], // meta map
file("https://github.com/nf-core/test-datasets/raw/eager/testdata/Human/bam/JK2067_downsampled_s0.1.bam", checkIfExists: true) ] file(params.test_data['homo_sapiens']['illumina']['test3.single_end.markduplicates.sorted.bam'], checkIfExists: true) ]
SAMTOOLS_DEPTH ( input ) SAMTOOLS_DEPTH ( input )
SEXDETERRMINE ( SAMTOOLS_DEPTH.out.tsv, [] ) SEXDETERRMINE ( SAMTOOLS_DEPTH.out.tsv, [] )