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Changing fasta_sizes by chrom_sizes input path for genomecov

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This commit is contained in:
JoseEspinosa 2020-07-14 16:09:01 +02:00
parent 9d79d64eb9
commit 0ffa739cd0
2 changed files with 3 additions and 3 deletions
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4
software/bedtools/genomecov/main.nf
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@ -5,7 +5,7 @@ process GENOMECOV {
input:
path (bam)
path (fasta_sizes)
path (chrom_sizes)
val (genomecov_args)
output:
@ -13,6 +13,6 @@ process GENOMECOV {
script:
"""
bedtools genomecov -ibam ${bam} -g ${fasta_sizes} ${genomecov_args}
bedtools genomecov -ibam ${bam} -g ${chrom_sizes} ${genomecov_args}
"""
}

2
software/bedtools/genomecov/meta.yml
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@ -15,7 +15,7 @@ input:
type: file
description: Input genomic coordinates file
pattern: "*.{bam}"
- fasta_sizes:
- chrom_sizes:
type: file
description: Genome chromosome sizes
pattern: "*.{txt,sizes}"