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Newer container version because the previous one is misconfigured (#1961)

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The previous one raises the warning
> WARNING: Skipping mount /path/to/singularity-v3.9.0/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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Matthieu Muffato 2022-08-22 21:01:13 +01:00 committed by GitHub
parent a8e6a88163
commit 11cf45043c
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1 changed files with 2 additions and 2 deletions
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modules/ucsc/bedtobigbed/main.nf
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@ -5,8 +5,8 @@ process UCSC_BEDTOBIGBED {
// WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions. // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
conda (params.enable_conda ? "bioconda::ucsc-bedtobigbed=377" : null) conda (params.enable_conda ? "bioconda::ucsc-bedtobigbed=377" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/ucsc-bedtobigbed:377--h446ed27_1' : 'https://depot.galaxyproject.org/singularity/ucsc-bedtobigbed:377--ha8a8165_3' :
'quay.io/biocontainers/ucsc-bedtobigbed:377--h446ed27_1' }" 'quay.io/biocontainers/ucsc-bedtobigbed:377--ha8a8165_3' }"
input: input:
tuple val(meta), path(bed) tuple val(meta), path(bed)