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Fix tests

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This commit is contained in:
drpatelh 2021-02-05 10:44:08 +00:00
parent 81ae0089bc
commit 137d00b523
2 changed files with 7 additions and 7 deletions
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8
tests/software/bwa/index/test.yml
View file

@ -4,11 +4,11 @@
- bwa - bwa
- bwa_index - bwa_index
files: files:
- path: output/bwa/NC_010473.fa.amb - path: output/bwa/bwa/NC_010473.amb
md5sum: 942a990ae872f1c0b8d72dda2db405d5 md5sum: 942a990ae872f1c0b8d72dda2db405d5
- path: output/bwa/NC_010473.fa.bwt - path: output/bwa/bwa/NC_010473.bwt
md5sum: 7301b52e2ecb893d429a49fa692447ae md5sum: 7301b52e2ecb893d429a49fa692447ae
- path: output/bwa/NC_010473.fa.pac - path: output/bwa/bwa/NC_010473.pac
md5sum: 4d5e6fc45bbc968f7f859e9ca2cc89ad md5sum: 4d5e6fc45bbc968f7f859e9ca2cc89ad
- path: output/bwa/NC_010473.fa.sa - path: output/bwa/bwa/NC_010473.sa
md5sum: a47dcc92e750e2f16fbd979b8ff9538e md5sum: a47dcc92e750e2f16fbd979b8ff9538e

4
tests/software/bwa/mem/test.yml
View file

@ -6,7 +6,7 @@
- bwa_mem_single_end - bwa_mem_single_end
files: files:
- path: output/bwa/test.bam - path: output/bwa/test.bam
md5sum: 3ee21210bac387e0335008146e4728bc md5sum: 52e81e5bd523d0b27fe533b21a0d80f5
- name: bwa mem paired-end - name: bwa mem paired-end
command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config command: nextflow run ./tests/software/bwa/mem -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
@ -16,4 +16,4 @@
- bwa_mem_paired_end - bwa_mem_paired_end
files: files:
- path: output/bwa/test.bam - path: output/bwa/test.bam
md5sum: 510d8acc6448c07cdacce8e64ec0904c md5sum: 86d82fdb68ed384c656cfc62a253052f