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Adding worflow yml for bowtie2_align and bowtie2_build

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This commit is contained in:
JoseEspinosa 2021-01-30 22:53:27 +01:00
parent 986b72cee9
commit 177693de49
2 changed files with 82 additions and 0 deletions
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42
.github/workflows/bowtie2_align.yml vendored Normal file
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name: bowtie2_align
on:
push:
paths:
- software/bowtie2/align/**
- software/bowtie2/build/**
- .github/workflows/bowtie2_align.yml
- tests/software/bowtie2/**
pull_request:
paths:
- software/bowtie2/align/**
- software/bowtie2/build/**
- .github/workflows/bowtie2_align.yml
- tests/software/bowtie2/**
jobs:
ci_test:
runs-on: ubuntu-latest
strategy:
matrix:
nxf_version: [20.11.0-edge]
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
env:
NXF_VER: ${{ matrix.nxf_version }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag bowtie2_align --symlink --wt 2

40
.github/workflows/bowtie2_build.yml vendored Normal file
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name: bowtie2_build
on:
push:
paths:
- software/bowtie2/build/**
- .github/workflows/bowtie2_build.yml
- tests/software/bowtie2/**
pull_request:
paths:
- software/bowtie2/build/**
- .github/workflows/bowtie2_build.yml
- tests/software/bowtie2/**
jobs:
ci_test:
runs-on: ubuntu-latest
strategy:
matrix:
nxf_version: [20.11.0-edge]
env:
NXF_ANSI_LOG: false
steps:
- uses: actions/checkout@v2
- name: Install Nextflow
env:
NXF_VER: ${{ matrix.nxf_version }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: "3.x"
- name: Install dependencies
run: python -m pip install --upgrade pip pytest-workflow
# Test the module
- run: pytest --tag bowtie2_build --symlink --wt 2