Fix error on previous commit

This commit is contained in:
JoseEspinosa 2021-01-30 09:35:25 +01:00
parent 29989035a5
commit 986b72cee9
2 changed files with 0 additions and 76 deletions

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@ -1,75 +0,0 @@
name: bcftoos_
description: foo
keywords:
- align
- fasta
- genome
- reference
tools:
- bowtie2:
description: |
BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF.
homepage: http://samtools.github.io/bcftools/bcftools.html
documentation: http://www.htslib.org/doc/bcftools.html
doi: 10.1038/nmeth.1923
params:
- outdir:
type: string
description: |
The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode:
type: string
description: |
Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move.
- enable_conda:
type: boolean
description: |
Run the module with Conda using the software specified
via the `conda` directive
- singularity_pull_docker_container:
type: boolean
description: |
Instead of directly downloading Singularity images for use with Singularity,
force the workflow to pull and convert Docker containers instead.
- save_unaligned:
type: boolean
description: Save unaligned reads
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- reads:
type: file
description: |
List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.
- index:
type: file
description: Bowtie2 genome index files
pattern: "*.ebwt"
output:
- bam:
type: file
description: Output BAM file containing read alignments
pattern: "*.{bam}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
- fastq:
type: file
description: Unaligned FastQ files
pattern: "*.fastq.gz"
- log:
type: file
description: Aligment log
pattern: "*.log"
authors:
- "@kevinmenden"
- "@joseespinosa"
- "@drpatelh"

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@ -70,6 +70,5 @@ output:
description: Aligment log
pattern: "*.log"
authors:
- "@kevinmenden"
- "@joseespinosa"
- "@drpatelh"