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Update the commands in the Using existing modules section (#698)

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kojix2 2021-09-09 16:32:33 +09:00 committed by GitHub
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@ -40,7 +40,7 @@ We have written a helper command in the `nf-core/tools` package that uses the Gi
2. List the available modules: 2. List the available modules:
```console ```console
$ nf-core modules list $ nf-core modules list remote
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___ __ __ __ ___ /,-._.--~\ ___ __ __ __ ___ /,-._.--~\
@ -65,7 +65,7 @@ We have written a helper command in the `nf-core/tools` package that uses the Gi
3. Install the module in your pipeline directory: 3. Install the module in your pipeline directory:
```console ```console
$ nf-core modules install . --tool fastqc $ nf-core modules install fastqc
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@ -92,7 +92,7 @@ We have written a helper command in the `nf-core/tools` package that uses the Gi
5. Remove the module from the pipeline repository if required: 5. Remove the module from the pipeline repository if required:
```console ```console
$ nf-core modules remove . --tool fastqc $ nf-core modules remove fastqc
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@ -109,7 +109,7 @@ We have written a helper command in the `nf-core/tools` package that uses the Gi
6. Check that a locally installed nf-core module is up-to-date compared to the one hosted in this repo: 6. Check that a locally installed nf-core module is up-to-date compared to the one hosted in this repo:
```console ```console
$ nf-core modules lint . --tool fastqc $ nf-core modules lint fastqc
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