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Update the commands in the Using existing modules section (#698)

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kojix2 2021-09-09 16:32:33 +09:00 committed by GitHub
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@ -40,7 +40,7 @@ We have written a helper command in the `nf-core/tools` package that uses the Gi
2. List the available modules:
```console
$ nf-core modules list
$ nf-core modules list remote
,--./,-.
___ __ __ __ ___ /,-._.--~\
@ -65,7 +65,7 @@ We have written a helper command in the `nf-core/tools` package that uses the Gi
3. Install the module in your pipeline directory:
```console
$ nf-core modules install . --tool fastqc
$ nf-core modules install fastqc
,--./,-.
___ __ __ __ ___ /,-._.--~\
@ -92,7 +92,7 @@ We have written a helper command in the `nf-core/tools` package that uses the Gi
5. Remove the module from the pipeline repository if required:
```console
$ nf-core modules remove . --tool fastqc
$ nf-core modules remove fastqc
,--./,-.
___ __ __ __ ___ /,-._.--~\
@ -109,7 +109,7 @@ We have written a helper command in the `nf-core/tools` package that uses the Gi
6. Check that a locally installed nf-core module is up-to-date compared to the one hosted in this repo:
```console
$ nf-core modules lint . --tool fastqc
$ nf-core modules lint fastqc
,--./,-.
___ __ __ __ ___ /,-._.--~\