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Fixing abacas meta.yml file (#447)

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* Fixing abacas meta.yml file

* Fix lint test
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Jose Espinosa-Carrasco 2021-04-15 12:17:06 +02:00 committed by GitHub
parent 2ed9b6ae28
commit 1e033bbf02
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1 changed files with 14 additions and 4 deletions
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software/abacas/meta.yml
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@ -6,7 +6,10 @@ keywords:
- contiguate
tools:
- abacas:
description: ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
description: |
ABACAS is intended to rapidly contiguate (align, order, orientate),
visualize and design primers to close gaps on shotgun assembled
contigs based on a reference sequence.
homepage: http://abacas.sourceforge.net/documentation.html
documentation: http://abacas.sourceforge.net/documentation.html
tool_dev_url: None
@ -35,9 +38,16 @@ output:
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- results:
type: file
description: Sorted BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
type: files
description: |
List containing abacas output files
[ 'test.abacas.bin', 'test.abacas.fasta', 'test.abacas.gaps',
'test.abacas.gaps.tab', 'test.abacas.nucmer.delta',
'test.abacas.nucmer.filtered.delta', 'test.abacas.nucmer.tiling',
'test.abacas.tab', 'test.abacas.unused.contigs.out',
'test.abacas.MULTIFASTA.fa' ]
pattern: "*.{abacas}*"
- version:
type: file
description: File containing software version