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refactor(homer): Update output path for bedGraph (#1438)

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This allow for caching because otherwise it modifies the tag directory input
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Edmund Miller 2022-03-25 08:54:09 -05:00 committed by GitHub
parent 98ed71c8f6
commit 1fb1801dcb
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3 changed files with 5 additions and 5 deletions
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4
modules/homer/makeucscfile/main.nf
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@ -13,7 +13,7 @@ process HOMER_MAKEUCSCFILE {
tuple val(meta), path(tagDir) tuple val(meta), path(tagDir)
output: output:
tuple val(meta), path("tag_dir/*ucsc.bedGraph.gz"), emit: bedGraph tuple val(meta), path("*.bedGraph.gz"), emit: bedGraph
path "versions.yml" , emit: versions path "versions.yml" , emit: versions
when: when:
@ -25,7 +25,7 @@ process HOMER_MAKEUCSCFILE {
""" """
makeUCSCfile \\ makeUCSCfile \\
$tagDir \\ $tagDir \\
-o auto \\ -o ${prefix}.bedGraph \\
$args $args
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml

2
modules/homer/makeucscfile/meta.yml
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@ -30,7 +30,7 @@ output:
- bedGraph: - bedGraph:
type: file type: file
description: The UCSC bed graph description: The UCSC bed graph
pattern: "tag_dir/*ucsc.bedGraph.gz" pattern: "*.bedGraph.gz"
- versions: - versions:
type: file type: file
description: File containing software versions description: File containing software versions

2
tests/modules/homer/makeucscfile/test.yml
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@ -4,4 +4,4 @@
- homer - homer
- homer/makeucscfile - homer/makeucscfile
files: files:
- path: output/homer/tag_dir/tag_dir.ucsc.bedGraph.gz - path: output/homer/test.bedGraph.gz