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Adapt linting action (#556)

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* bump bcftools filter

* fix bcftools

* adapt module linting
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Kevin Menden 2021-07-02 14:15:32 +02:00 committed by GitHub
parent b59e8054e4
commit 2395734492
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1 changed files with 3 additions and 3 deletions
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6
.github/workflows/nf-core-linting.yml vendored
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@ -16,7 +16,7 @@ jobs:
- uses: dorny/paths-filter@v2 - uses: dorny/paths-filter@v2
id: filter id: filter
with: with:
filters: 'tests/config/pytest_software.yml' filters: "tests/config/pytest_software.yml"
lint: lint:
runs-on: ubuntu-20.04 runs-on: ubuntu-20.04
@ -29,7 +29,7 @@ jobs:
strategy: strategy:
fail-fast: false fail-fast: false
matrix: matrix:
tags: ['${{ fromJson(needs.changes.outputs.modules) }}'] tags: ["${{ fromJson(needs.changes.outputs.modules) }}"]
steps: steps:
- uses: actions/checkout@v2 - uses: actions/checkout@v2
@ -65,7 +65,7 @@ jobs:
sudo mv nextflow /usr/local/bin/ sudo mv nextflow /usr/local/bin/
- name: Lint ${{ matrix.tags }} - name: Lint ${{ matrix.tags }}
run: nf-core modules lint . -t ${{ matrix.tags }} run: nf-core modules lint ${{ matrix.tags }}
- uses: actions/cache@v2 - uses: actions/cache@v2
with: with: