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Update: MALT_RUN (#706)

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* Specify more guidelines on input channels

* Linting

* Updates based on code review

* Update README.md

* Fix broken sentence

* Bump MALT versions for MALT-run

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
This commit is contained in:
James A. Fellows Yates 2021-09-15 17:37:46 +02:00 committed by GitHub
parent 1bc3f6cf39
commit 26fc617983
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1 changed files with 3 additions and 3 deletions
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modules/malt/run/main.nf
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@ -11,11 +11,11 @@ process MALT_RUN {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:[:], publish_by_meta:[]) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:[:], publish_by_meta:[]) }
conda (params.enable_conda ? "bioconda::malt=0.5.2" : null) conda (params.enable_conda ? "bioconda::malt=0.53" : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container "https://depot.galaxyproject.org/singularity/malt:0.5.2--0" container "https://depot.galaxyproject.org/singularity/malt:0.53--hdfd78af_0"
} else { } else {
container "quay.io/biocontainers/malt:0.5.2--0" container "quay.io/biocontainers/malt:0.53--hdfd78af_0"
} }
input: input: