millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2025-01-02 20:52:07 -05:00
Code Issues Releases Packages Activity

Update tests/software/bedtools/maskfasta/main.nf

Browse source
This commit is contained in:
Harshil Patel 2021-02-09 21:36:38 +00:00 committed by GitHub
parent 3f431014a4
commit 28866f3dc7
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 4 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

7
tests/software/bedtools/maskfasta/main.nf
View file

@ -5,10 +5,9 @@ nextflow.enable.dsl = 2
include { BEDTOOLS_MASKFASTA } from '../../../../software/bedtools/maskfasta/main.nf' addParams( options: [:] ) include { BEDTOOLS_MASKFASTA } from '../../../../software/bedtools/maskfasta/main.nf' addParams( options: [:] )
workflow test_bedtools_maskfasta { workflow test_bedtools_maskfasta {
def bed,fasta = [] def bed = [ [ id:'test'],
bed = [ [ id:'test'], file("${launchDir}/tests/data/bed/C.bed", checkIfExists: true) ]
file("${launchDir}/tests/data/bed/C.bed", checkIfExists: true) ] def fasta = [ file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) ]
fasta = [ file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) ]
BEDTOOLS_MASKFASTA( bed, fasta ) BEDTOOLS_MASKFASTA( bed, fasta )
} }