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Update tests/software/bedtools/maskfasta/main.nf

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Harshil Patel 2021-02-09 21:36:38 +00:00 • committed by GitHub
parent 3f431014a4
commit 28866f3dc7
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1 changed files with 3 additions and 4 deletions
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tests/software/bedtools/maskfasta/main.nf
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@ -5,10 +5,9 @@ nextflow.enable.dsl = 2
include { BEDTOOLS_MASKFASTA } from '../../../../software/bedtools/maskfasta/main.nf' addParams( options: [:] )
workflow test_bedtools_maskfasta {
def bed,fasta = []
bed = [ [ id:'test'],
def bed = [ [ id:'test'],
file("${launchDir}/tests/data/bed/C.bed", checkIfExists: true) ]
fasta = [ file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) ]
def fasta = [ file("${launchDir}/tests/data/fasta/E_coli/NC_010473.fa", checkIfExists: true) ]
BEDTOOLS_MASKFASTA( bed, fasta )
}