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Faqcs patch (#1367)
* faqcs update to capture debug output * change paths Co-authored-by: Cipriano <rrn8@cdc.gov>
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@ -13,6 +13,7 @@ process FAQCS {
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output:
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tuple val(meta), path('*.trimmed.fastq.gz') , emit: reads
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tuple val(meta), path('*.stats.txt') , emit: stats
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tuple val(meta), path('*.txt') , optional:true, emit: txt
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tuple val(meta), path('*_qc_report.pdf') , optional:true, emit: statspdf
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tuple val(meta), path('*.log') , emit: log
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tuple val(meta), path('*.discard.fastq.gz') , optional:true, emit: reads_fail
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@ -54,6 +54,10 @@ output:
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type: file
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description: trimming/qc text stats file
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pattern: "*.stats.txt"
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- txt:
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type: file
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description: trimming/qc text txt files from --debug option
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pattern: "*.txt"
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- statspdf:
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type: file
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description: trimming/qc pdf report file
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