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fix(appyter): Remove ids

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Co-authored-by:  sruthipsuresh <sps180004@utdallas.edu>
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Edmund Miller 2021-03-15 14:53:19 -05:00
parent a371e92951
commit 2d7ac8596a
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1 changed files with 1 additions and 3 deletions
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software/appyter/main.nf
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@ -5,11 +5,10 @@ params.options = [:]
options = initOptions(params.options) options = initOptions(params.options)
process APPYTER { process APPYTER {
tag "$meta.id"
label 'process_medium' label 'process_medium'
publishDir "${params.outdir}", publishDir "${params.outdir}",
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process)) }
// FIXME These rely on docker and won't work with conda // FIXME These rely on docker and won't work with conda
// conda (params.enable_conda ? "bioconda::fastqc=0.11.9" : null) // conda (params.enable_conda ? "bioconda::fastqc=0.11.9" : null)
@ -29,7 +28,6 @@ process APPYTER {
script: script:
// Add soft-links to original FastQs for consistent naming in pipeline // Add soft-links to original FastQs for consistent naming in pipeline
def software = getSoftwareName(task.process) def software = getSoftwareName(task.process)
def prefix = options.suffix ? "${meta.id}.${options.suffix}" : "${meta.id}"
""" """
appyter nbconstruct -i $input -o data/output.ipynb appyter nbconstruct -i $input -o data/output.ipynb