millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 11:08:17 +00:00
Code Issues Releases Packages Activity

refine comment

Browse source 
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
This commit is contained in:
SusiJo 2022-05-20 13:08:26 +02:00 committed by GitHub
parent 3b3921cfa3
commit 2e5aa0dbb4
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
modules/cnvkit/batch/main.nf
View file

@ -31,7 +31,7 @@ process CNVKIT_BATCH {
// input pair is assumed to have same extension if both exist // input pair is assumed to have same extension if both exist
def is_cram = tumor.Extension == "cram" ? true : false def is_cram = tumor.Extension == "cram" ? true : false
def tumor_out = is_cram ? tumor.BaseName + ".bam" : "${tumor}" def tumor_out = is_cram ? tumor.BaseName + ".bam" : "${tumor}"
// do not run samtools on normal samples in tumor_only // do not run samtools on normal samples in tumor_only mode
def normal_exists = normal ? true: false def normal_exists = normal ? true: false
// tumor_only mode does not need fasta & target // tumor_only mode does not need fasta & target
// instead it requires a pre-computed reference which is built from fasta & target // instead it requires a pre-computed reference which is built from fasta & target