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kevinmenden 2020-12-18 11:11:19 +01:00
parent db0b631906
commit 32f6191ff3
2 changed files with 120 additions and 120 deletions
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2
software/bowtie/align/functions.nf
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@ -31,7 +31,7 @@ def initOptions(Map args) {
*/
def getPathFromList(path_list) {
def paths = path_list.findAll { item -> !item?.trim().isEmpty() } // Remove empty entries
paths = paths.collect { it.trim().replaceAll("^[/]+|[/]+\$", "") } // Trim whitespace and trailing slashes
paths = paths.collect { it.trim().replaceAll("^[/]+|[/]+\$", '') } // Trim whitespace and trailing slashes
return paths.join('/')
}

2
software/bowtie/index/functions.nf
View file

@ -31,7 +31,7 @@ def initOptions(Map args) {
*/
def getPathFromList(path_list) {
def paths = path_list.findAll { item -> !item?.trim().isEmpty() } // Remove empty entries
paths = paths.collect { it.trim().replaceAll("^[/]+|[/]+\$", "") } // Trim whitespace and trailing slashes
paths = paths.collect { it.trim().replaceAll("^[/]+|[/]+\$", '') } // Trim whitespace and trailing slashes
return paths.join('/')
}