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SusiJo 2022-05-31 15:29:27 +02:00
parent 810564deca
commit 37b543e3e7
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tests/modules/gatk4/markduplicatesspark/test.yml
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@ -25,4 +25,4 @@
- path: output/gatk4/test.bam
md5sum: 898cb0a6616897d8ada90bab53bf0837
- path: output/gatk4/test.metrics
contains: "## METRICS CLASS\torg.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics\nLIBRARY\tUNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED\tSECONDARY_OR_SUPPLEMENTARY_RDS\tUNMAPPED_READS\tUNPAIRED_READ_DUPLICATES\tREAD_PAIR_DUPLICATES\tREAD_PAIR_OPTICAL_DUPLICATESPERCENT_DUPLICATION\tESTIMATED_LIBRARY_SIZE\ntestN\t0\t2820\t2\t2\t0\t828\t0\t0.293617\t3807\ntestT\t0\t2718\t0\t0\t0\t716\t0\t0.263429\t4206"
contains: "## METRICS CLASS org.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics"