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Fix trimgalore test

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This commit is contained in:
drpatelh 2021-02-03 17:02:52 +00:00
parent 305d47fc87
commit 39b8600dbb
1 changed files with 6 additions and 6 deletions
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12
tests/software/trimgalore/test.yml
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@ -5,8 +5,8 @@
files: files:
# These can't be md5'd reliably # These can't be md5'd reliably
# TODO Test for includes # TODO Test for includes
- path: output/test_single_end/test.fastq.gz_trimming_report.txt - path: output/trimgalore/test.fastq.gz_trimming_report.txt
- path: output/test_single_end/test_trimmed.fq.gz - path: output/trimgalore/test_trimmed.fq.gz
- name: trimgalore paired-end - name: trimgalore paired-end
command: nextflow run ./tests/software/trimgalore/ -entry test_trimgalore_paired_end -c tests/config/nextflow.config command: nextflow run ./tests/software/trimgalore/ -entry test_trimgalore_paired_end -c tests/config/nextflow.config
@ -15,7 +15,7 @@
files: files:
# These can't be md5'd reliably # These can't be md5'd reliably
# TODO Test for includes # TODO Test for includes
- path: output/test_paired_end/test_1.fastq.gz_trimming_report.txt - path: output/trimgalore/test_1.fastq.gz_trimming_report.txt
- path: output/test_paired_end/test_1_val_1.fq.gz - path: output/trimgalore/test_1_val_1.fq.gz
- path: output/test_paired_end/test_2.fastq.gz_trimming_report.txt - path: output/trimgalore/test_2.fastq.gz_trimming_report.txt
- path: output/test_paired_end/test_2_val_2.fq.gz - path: output/trimgalore/test_2_val_2.fq.gz