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fix testing errors

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This commit is contained in:
CMGG ICT Team 2022-04-22 15:19:52 +02:00
parent b4af3f1475
commit 3bcae8e71e
2 changed files with 15 additions and 3 deletions
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2
tests/modules/bamtools/split/main.nf
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@ -20,7 +20,7 @@ workflow test_bamtools_split_multiple {
input = [
[ id:'test', single_end:false ], // meta map
[file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true),
file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)]
file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)]
]

16
tests/modules/bamtools/split/test.yml
View file

@ -1,5 +1,5 @@
- name: bamtools split test_bamtools_split
command: nextflow run tests/modules/bamtools/split -entry test_bamtools_split -c tests/config/nextflow.config
- name: bamtools split test_bamtools_split_single_input
command: nextflow run tests/modules/bamtools/split -entry test_bamtools_split_single_input -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/split
@ -9,3 +9,15 @@
- path: output/bamtools/test.REF_unmapped.bam
md5sum: e0754bf72c51543b2d745d96537035fb
- path: output/bamtools/versions.yml
- name: bamtools split test_bamtools_split_multiple
command: nextflow run tests/modules/bamtools/split -entry test_bamtools_split_multiple -c tests/config/nextflow.config
tags:
- bamtools
- bamtools/split
files:
- path: output/bamtools/test.REF_chr22.bam
md5sum: 585675bea34c48ebe9db06a561d4b4fa
- path: output/bamtools/test.REF_unmapped.bam
md5sum: 16ad644c87b9471f3026bc87c98b4963
- path: output/bamtools/versions.yml