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remove taxonomy not used in place of db

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Carpanzano 2022-05-02 17:13:58 +02:00
parent 2e4c200a26
commit 3cebcbfc0a
1 changed files with 0 additions and 2 deletions
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tests/modules/krona/ktimporttaxonomy/main.nf
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@ -12,7 +12,6 @@ workflow test_krona_ktimporttaxonomy_reads {
[ id:'test', single_end:false ], // meta map [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['metagenome']['classified_reads_assignment'], checkIfExists: true) file(params.test_data['sarscov2']['metagenome']['classified_reads_assignment'], checkIfExists: true)
] ]
// taxonomy = file(params.test_data['generic']['txt']['hello'], checkIfExists: true)
DOWNLOAD_DB() DOWNLOAD_DB()
TAXONOMY_READS ( input, DOWNLOAD_DB.out.db ) TAXONOMY_READS ( input, DOWNLOAD_DB.out.db )
@ -24,7 +23,6 @@ workflow test_krona_ktimporttaxonomy_report {
[ id:'test', single_end:false ], // meta map [ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['metagenome']['report'], checkIfExists: true) file(params.test_data['sarscov2']['metagenome']['report'], checkIfExists: true)
] ]
taxonomy = file(params.test_data['generic']['txt']['hello'], checkIfExists: true)
DOWNLOAD_DB() DOWNLOAD_DB()
TAXONOMY_REPORT ( input, DOWNLOAD_DB.out.db ) TAXONOMY_REPORT ( input, DOWNLOAD_DB.out.db )